Small molecule crystallography
 
 
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Determination of the molecular structure of chemical compounds by X-ray diffraction (XRD) is the primary function of Rigaku small molecule crystal­lography systems. This method, also called X-ray crystal­lography, is the definitive technique for understanding the three-dimensional structure of chemical compounds: the compo­sition of atoms, their relative orienta­tion, and the chemical bonds between the atoms (both bond lengths and bond angles). This structural knowledge then pro­vides part of the basis for understanding and predicting the chemistry of the whole molecule, or one or more of its subcompo­nents (or functional groups).

X-ray crystallography is the study of crystal structures through X-ray diffraction tech­niques. When an X-ray beam bombards a crystalline lattice in a given orientation, the beam is scattered in a reproducable manner characterized by the atomic structure of the lattice. This diffraction phenomenon occurs when the wavelength of X-rays and the inter­atomic distances in the lattice are of a similar magnitude.

 
 
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RAPID II
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Diamond anvil cell
RAPID II
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RAPID II application gallery


Curved image plate detector


Adam Matzger, University of Michigan

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Powder diffraction

 

 

 

RAPID II — the versatile X-ray diffraction system

Single crystal structure plus powder diffraction for phase i.d. / structure

A compact, fully integrated high-resolution, small molecule crystallography system, the Rigaku RAPID II is the latest member of the RAPID family of large area curved image plate (IP) detector-based X-ray diffraction systems. The RAPID II combines every component needed for a high-performance X-ray diffraction system delivering no-compromise performance for applications ranging from applied crystallo­graphy to chemical crystallography. In addition to small molecule crystallography, other typical applications (depending on configuration) include: high-resolution charge density measurement, micro-diffraction, diffuse scattering, measurement of weakly diffracting disordered materials, wide angle X-ray scattering (WAXS), stress and texture measurements, and general purpose powder diffraction.


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Curved detector for maximum reciprocal space coverage

RAPID II is so versatile that it can replace several instruments without compromising data quality. Its unique, curved large-area detector subtends a 2θ range of 204° at a single detector setting for maximum reciprocal space coverage. The large curved active area is advantageous because a massive solid angle of data is collected in a single exposure. While the wide dynamic range eliminates worrying about detector saturation, the curved-plate geometry of the RAPID II reduces oblique-incidence X-ray absorption effects seen with flat detectors of any kind.

Powerful software suites to process X-ray diffraction data

CrystalClear™ is a data collection and analysis package designed for single crystal data. Based on Rigaku's easy-to-use flow bar user interface, CrystalClear walks the user through steps required to collect and prepare a data set for structure determination. Includes data collection, image display, indexing, space group determination, integration, scaling and absorption correction. Optional software packages include 2DP, 3D Explore and PDXL. 2DP is a general purpose 2D data processing software package offering 2D image processing and integration for powder and other polycrystalline materials. 3D Explore is a state-of-the-art display package for reciprocal space mapping and pole figure analysis. The PDXL powder diffraction suite offers modules for basic powder diffraction analysis, automated search match, Rietveld refinement, powder pattern simulations, crystallite size determination, and percent crystallinity.

RAPID II with FR-E+ SuperBright DW dual-wavelength source

Choice of X-ray sources, including dual wavelength

Inherent to the flexibility of this system is a choice of X-ray sources, ranging from: a high-frequency 3 kW sealed tube, to a MicroMax-003 microfocus seal tube, to a 1.2 kW MicroMax™-007 HF microfocus rotating anode. Available optics range from a traditional graphite monochromator or high-performance SHINE™ optic to a VariMax™ confocal X-ray optic. A new dual wavelength option is available with the new MicroMax-007 HF DW or FR-E+ SuperBright™ sources (shown at right). In a novel approach, two optics are housed in a single assembly, with either optic being selected by a simple rotation. In addition, the patented adjustable divergence feature is maintained for each optic.

RAPID II: an extraordinarily diverse X-ray diffraction platform
  • No compromise molecular structure determination with any wavelength
  • Multiple and dual wavelengths available (Cu, Mo, Ag, etc.)
  • Fast data collection with high dynamic range and low background noise
  • High-resolution charge density measurements
  • Measurements of weakly diffracting disordered materials
  • Powder diffraction
  • Micro-diffraction
  • Diffuse scattering